diff --git a/Source/Core/VideoCommon/Resources/CustomResourceManager.cpp b/Source/Core/VideoCommon/Resources/CustomResourceManager.cpp
index 56556285d8..ffb16b055a 100644
--- a/Source/Core/VideoCommon/Resources/CustomResourceManager.cpp
+++ b/Source/Core/VideoCommon/Resources/CustomResourceManager.cpp
@@ -31,7 +31,10 @@ void CustomResourceManager::Initialize()
 void CustomResourceManager::Shutdown()
 {
   if (m_async_shader_compiler)
+  {
     m_async_shader_compiler->StopWorkerThreads();
+    m_async_shader_compiler->ClearAllWork();
+  }
 
   m_asset_cache.Shutdown();
   m_worker_thread.Shutdown();